Führer / President
King Bradley · head of State and military
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The Führer sits at the top of Amestris' government and armed forces.
King Bradley therefore appears to be the final authority even before the audience learns that he is Wrath.
What changed
Once Bradley's identity is known, the Homunculi are no longer a secret organization merely hiding from the government. One of them is the government office every military career ultimately answers to.